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Genome Browser: GENOME BROWSER provides data about Branchiostoma floridae sequence and annotated data including 2 different kinds of annotative information for the Integrate cDNA library for Branchiostoma floridae.
| Dataset | Description | Source |
| Branchiostoma floridae.v2.0 assembly.fa | A non-redundant representation (v2.0) of the genome sequence about Branchiostoma floridae. | The amphioxus genome and the evolution of the chordate karyotype. Putnam, N. H., T. Butts, et al. (2008). |
| Branchiostoma floridae.v2.0 assembly.gff | The annotation information about Branchiostoma floridae.v2.0 assembly | The amphioxus genome and the evolution of the chordate karyotype. Putnam, N. H., T. Butts, et al. (2008). |
| cDNA library | The another annotative information about the Integrate cDNA library for Branchiostoma floridae. | Unveiling Hidden Gene Expression in Dynamic Study of Amphioxus Embryo Development |
Blast: If you have a sequence about amphioxus, and you want to know what this sequence represents. The IncDNA-BF has a blastn function in the Blast page that can be used to search by sequence.
There are two ways to search, either paste sequence in FASTA format in the textbox or load a FASTA file. And you can set a e value to limit the result, the default is 1e-10.
Please note: Make sure your data format is FASTA format no matter which input way.
Integrative cDNA library for Branchiostoma floridae
Integrative cDNA library for Branchiostoma floridae
Version 1.0
| Dataset | Species | Description | Download |
| cDNA | Branchiostoma floridae | This file is all 91,900 transcripts sequence information of Branchiostoma floridae. | Download |
| cDNA annotation | Branchiostoma floridae | This file is the annotative information about IncDNA-BF. | Download |
| Gene isoforms | Branchiostoma floridae | The gene isoforms information about IncDNA-BF is depending on the genome of the Branchiostoma floridae reference assembley v2.0. | Download |
IncDNA: a pipeline for integrative cDNA library construction
IncDNA: a pipeline for integrative cDNA library construction
Version 1.0
The IncDNA-BF provides three kinds of cDNA data about the Integrate cDNA library for Branchiostoma floridae . Here, we also provide a pipeline for integrative cDNA library construction. You can get these resource in the Download page.
Please note: These resource are totally FREE for download while login is needed for statistics. If you do not have an account, please register one for FREE.
- To be updated.